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2023年度

  1. Enantioselectivity of discretized helical supramolecule consisting of achiral cobalt phthalocyanines via chiral-induced spin selectivity effect
    Aizawa H, Sato T, Maki-Yonekura S, Yonekura K, Takaba K, Hamaguchi T, Minato T, M. Yamamoto H
    Nature Communications 14(1) 2023年7月28日
  2. Measurement of charges and chemical bonding in a cryo-EM structure
    Maki-Yonekura S, Kawakami K, Takaba K, Hamaguchi T, Yonekura K
    Communications Chemistry 6(1) 2023年5月31日

2022年度

論文

  1. Takaba K, Maki-Yonekura S, Inoue I., Tono K, Hamaguchi T, Kawakami K, Naitow H, Ishikawa T., Yabashi M, Yonekura K*, “Structural resolution of a small organic molecule by serial X-ray free-electron laser and electron crystallography”, Nat., Chem., 15, 491-497.　(プレスリリース)
  2. Himiyama T.*, Hamaguchi T, Yonekura K, Nakamura T. “Unnaturally Distorted Hexagonal Protein Ring Alternatingly Reorganized from Two Distinct Chemically Modified Proteins”, Bioconjugate Chem. in press
  3. Matsuike D, Tahara O.Y, Nonaka T, Wu H.N, Hamaguchi T., Kudo H, Hayashi Y, Arai M, Miyata M, “Structure and Function of Gli123 Involved in Mycoplasma mobile Gliding” Journal of Bacteriology, in press
  4. Nagao R.*, Kato K., Hamaguchi T. (equally contribution), Ueno Y., Tsuboshita N., Shimizu S., Furutani M., Ehira S., Nakajima Y., Kawakami K., Suzuki T., Dohmae N., Akimoto S., Yonekura K.*, Shen J.-R.* “Structure of a monomeric photosystem I core associated with iron-stressed-induced-A proteins from Anabaena sp. PCC 7120”, Nat. Commun. 14, 920.　(プレスリリース)
  5. Sekiyama N, Takaba K, Maki-Yonekura S, Akagi K., Ohtani Y, Imamura K, Terakawa T, Yamashita K, Yonekura K, Kodama T.S, Tochio H. “ALS mutations in the TIA-1 prion-like domain induce pathological structures”. Proc. Natl. Acad. Sci. USA 119, e2122523119 (2022).
  6. Kato K , Hamaguchi T (equally contribution), Nagao R, Kawakami K, Ueno Y, Suzuki T, Uchida H, Murakami A, Nakajima Y, Yokono M, Akimoto S, Dohmae N, Yonekura K, and Shen J.R. 2022. “Structural Basis for the Absence of Low-Energy Chlorophylls in a Photosystem I Trimer from Gloeobacter violaceus.” ELife 11:73990. doi: 10.7554/ELIFE.73990.　(プレスリリース)
  7. Kawakami K,  Hamaguchi T (equally contribution), Hirose Y, Kosumi D, Miyata M, Kamiya N, and Yonekura K 2022. “Core and Rod Structures of a Thermophilic Cyanobacterial Light-Harvesting Phycobilisome.” Nature Communications 2022 13:1 13(1):1–13. doi: 10.1038/s41467-022-30962-9.　(プレスリリース)
  8. Kimura A,  Kitoh-Nishioka H, Aota T, Hamaguchi T, Yonekura K, Kawakami K, Shinzawa-Itoh K, Inoue-Kashino N, Ifuku K, Yamashita E, Kashino Y, and Itoh S. 2022. “Theoretical Model of the Far-Red-Light-Adapted Photosystem I Reaction Center of Cyanobacterium Acaryochloris marina Using Chlorophyll d and the Effect of Chlorophyll Exchange.” The Journal of Physical Chemistry B 126(22):4009–21. doi: 10.1021/ACS.JPCB.2C00869.
  9. Inoue S, Nikaido K, Higashino T, Arai S, Tanaka M, Kumai R, Tsuzuki S, Horiuchi S, Sugiyama H, Segawa Y, Takaba K, Maki-Yonekura S, Yonekura K, and Hasegawa T. 2022. “Emerging Disordered Layered-Herringbone Phase in Organic Semiconductors Unveiled by Electron Crystallography.” Chemistry of Materials 34(1). doi: 10.1021/acs.chemmater.1c02793.

 

口頭発表

  1. 濵口 祐「多様なソフトマテリアルへの応用を目指したクライオ電子顕微鏡運用」，ソフトマテリアル研究拠点「2022年度活動報告会」，2023年3月30日
  2. 米倉 功治 “クライオEM の分子像と電子回折測定のAI 制御”「ソフトマテリアルの顕微鏡解析でAIをどう活用できるか」, 日本顕微鏡学会 ソフトマテリアル分科会, 2023年2月18日
  3. 濵口祐 “クライオ電顕関連の講演１（運用、窓口等について）” 生産性に効く！最先端ナノ計測評価技術, 東北大学多元物質科学研究所 イノベーション・エクスチェンジ2022, 2023年1月18日
  4. 米倉 功治 「クライオEM、3D EDによる高度解析」 未踏分析技術イノベーションウェビナー ～日本発未踏技術を世界の産業活性にテイクオフさせる必見企画～ 2022年12月6日
  5. Hamaguchi T “Analysis of Japanese sake using synchrotron light and cryo-TEM” Switzerland -Japan Workshop for Synchrotron Light and Wine/Sake， 2022年11月25日
  6. 米倉 功治「理研初号機と東北大多元研IIのリモート運用」 AMED/BINDS第1回クライオ電子顕微鏡施設技術交流会 2022年11月22日
  7. 濱口 祐 「理研・東北大の施設報告」 AMED/BINDS第1回クライオ電子顕微鏡施設技術交流会 2022年11月21日
  8. Yonekura K ”Two-way application of cryo-EM to high-resolution single particle analysis and 3D ED” 1st Tohoku-Bordeaux-Geneva universities Joint Workshop 2022年11月11日
  9. 濵口 祐 「高精度クライオEMによる構造解析」生理研研究会「新世代のクライオ電子顕微鏡」 2022年11月1日
  10. Yonekura K “Two-way Application of Single Particle Cryo-EM and 3D ED for High-resolution Structure Analyses” AsCA 2022 2022年10月31日
  11. 米倉 功治、濵口 祐、高場 圭章、川上 恵典、眞木 さおり 「CYPを対象としたCryo-EM」CBI学会2022年大会 新しい医薬品の概念が変える医療～次世代モダリティ、デジタルセラピー～ 2022年10月25日
  12. 米倉 功治 「クライオEMとeXによる高精度解析— 水素の可視化とその先へ」理研-JEOL連携センター講演会（研究成果報告会） 2022年10月15日
  13. 米倉 功治 「クライオ電子顕微鏡による有機分子観察について」東北大学-DOWA 技術者交流　2022年10月12日
  14. 米倉 功治 「クライオEMデータのAI測定 ～医薬品開発への応用～」第4回再生医療EXPO東京 2022年07月14日

 

2021年度以前（2019以降論文のみ）

論文

  1. Hamaguchi T, Kawakami K, Shinzawa-Itoh K, Inoue-Kashino N, Itoh S, Ifuku K, Yamashita E, Maeda K, Yonekura K, and Kashino Y. 2021. “Structure of the Far-Red Light Utilizing Photosystem I of Acaryochloris marina.” Nature Communications 12(1):2333. doi: 10.1038/s41467-021-22502-8.
  2. Hiragi K, Nishio K, Moriyama S, Hamaguchi T, Mizoguchi A, Yonekura K, Tani K, and Mizushima T. 2021. “Structural Insights into the Targeting Specificity of Ubiquitin Ligase for S. cerevisiae Isocitrate Lyase but Not C. Albicans Isocitrate Lyase.” Journal of Structural Biology 213(3):107748. doi: 10.1016/j.jsb.2021.107748.
  3. Kato K, Miyazaki N, Hamaguchi T (equally contribution), Nakajima Y, Akita F, Yonekura K, and Shen J.R. 2021. “High-Resolution Cryo-EM Structure of Photosystem II Reveals Damage from High-Dose Electron Beams.” Communications Biology 4(1):382. doi: 10.1038/s42003-021-01919-3.
  4. Kawakami K, Nagao R, Tahara Y.O, Hamaguchi T, Suzuki T, Dohmae N, Kosumi D, Shen J.R, Miyata M, Yonekura K, and Kamiya N. 2021. “Structural Implications for a Phycobilisome Complex from the Thermophilic Cyanobacterium Thermosynechococcus vulcanus.” Biochimica et Biophysica Acta (BBA) – Bioenergetics 1862(9):148458. doi: 10.1016/J.BBABIO.2021.148458.
  5. Yonekura K, Maki-Yonekura S, Hamaguchi T, Naitow H, Takaba K, and Kawakami K. 2021. “Cryo-EM and ED with a Cold-Field Emission Beam and Energy Filtration.” 233–41. doi: 10.1007/978-981-16-2982-2_23.
  6. Yonekura K, Maki-Yonekura S, Naitow H, Hamaguchi T, and Takaba K. 2021. “Machine Learning-Based Real-Time Object Locator/Evaluator for Cryo-EM Data Collection.” Communications Biology 2021 4:1 4(1):1–8. doi: 10.1038/s42003-021-02577-1.　(プレスリリース)
  7.  Yu H, Hamaguchi T (equally contribution), Nakajima Y, Kato K, Kawakami K, Akita F, Yonekura K, and Shen J.R. 2021. “Cryo-EM Structure of Monomeric Photosystem II at 2.78 Å Resolution Reveals Factors Important for the Formation of Dimer.” Biochimica et Biophysica Acta (BBA) – Bioenergetics 1862(10):148471. doi: 10.1016/J.BBABIO.2021.148471.
  8. Yonekura K, Maki-Yonekura S, Takaba K, Hamaguchi T, Naitow H, and Kawakami K. 2021. “Complementary Use of High-Resolution and High-Precision Cryo-ED and EM.” Microscopy and Microanalysis 27(S1). doi: 10.1017/s143192762100132x.
  9. Kato K, Takaba K, Maki-Yonekura S, Mitoma N, Nakanishi Y, Nishihara T, Hatakeyama T, Kawada T, Hijikata Y, Pirillo J, Scott L.T, Yonekura K, Segawa Y, and Itami K. 2021. “Double-Helix Supramolecular Nanofibers Assembled from Negatively Curved Nanographenes.” Journal of the American Chemical Society 143(14). doi: 10.1021/jacs.1c00863.
  10. Maki-Yonekura S,  Hamaguchi T, Naitow H, Takaba K, and Yonekura K. 2020. “Advances in Cryo-EM and ED with a Cold-Field Emission Beam and Energy Filtration —Refinements of the CRYO ARM 300 System in RIKEN SPring-8 Center—.” Microscopy 2020:1–9. doi: 10.1093/jmicro/dfaa052.
  11. Takaba K, Maki-Yonekura S, Inoue S, Hasegawa T, and Yonekura K. 2021. “Protein and Organic-Molecular Crystallography With 300kV Electrons on a Direct Electron Detector.” Frontiers in Molecular Biosciences 7. doi: 10.3389/fmolb.2020.612226.
  12. Yonekura K, Maki-Yonekura S, Hamaguchi T, Naitow H, Takaba K, and Kawakami K. 2021. “Cryo-EM and ED with a Cold-Field Emission Beam and Energy Filtration.” 233–41. doi: 10.1007/978-981-16-2982-2_23.
  13. Naitow H, Hamaguchi T(equally contribution), Maki-Yonekura S, Isogai M, Yoshikawa N, and Yonekura K. n.d. “Apple Latent Spherical Virus Structure with Stable Capsid Frame Supports Quasi-Stable Protrusions Expediting Genome Release.” doi: 10.1038/s42003-020-01217-4.
  14. Takaba K, Maki-Yonekura S, and Yonekura K. 2020. “Collecting Large Datasets of Rotational Electron Diffraction with ParallEM and SerialEM.” Journal of Structural Biology 211(2):107549. doi: 10.1016/j.jsb.2020.107549.
  15. Kurokawa H, Takanori Ambo, Takahashi S, and Koyama T. 2020. “Crystal Structure of Thermobifida fusca Cis-Prenyltransferase Reveals the Dynamic Nature of Its RXG Motif-Mediated Inter-Subunit Interactions Critical for Its Catalytic Activity.” Biochemical and Biophysical Research Communications 532(3). doi: 10.1016/j.bbrc.2020.08.062.
  16. Hamaguchi T, and Yonekura K. 2020. “Tidy up Cryo-EM Sample Grids with 3D Printed Tools.” Journal of Structural Biology 209(1):107414. doi: 10.1016/j.jsb.2019.107414.
  17. Guzmán-Afonso C, Hong Y.L, Colaux H, Iijima H, Saitow A, Fukumura T, Aoyama Y, Motoki S, Oikawa T, Yamazaki T, Yonekura K, and Nishiyama Y. 2019. “Understanding Hydrogen-Bonding Structures of Molecular Crystals via Electron and NMR Nanocrystallography.” Nature Communications 10(1). doi: 10.1038/s41467-019-11469-2.
  18. Kato T, Makino F, Nakane T, Terahara N, Kaneko T, Shimizu Y, Motoki S, Ishikawa I, Yonekura K, and Namba K. 2019. “CryoTEM with a Cold Field Emission Gun That Moves Structural Biology into a New Stage.” Microscopy and Microanalysis 25(S2). doi: 10.1017/s1431927619005725.
  19. Kubota M,Matsuoka R, Suzuki T, Yonekura K, Yanagi Y, and Hashiguchi T. 2019. “Molecular Mechanism of the Flexible Glycan Receptor Recognition by Mumps Virus.” Journal of Virology 93(15). doi: 10.1128/jvi.00344-19.
  20. Hamaguchi T,  Maki-Yonekura S, Naitow H, Matsuura Y, Ishikawa T, and Yonekura K. 2019. “A New Cryo-EM System for Single Particle Analysis.” Journal of Structural Biology 207(1):40–48. doi: 10.1016/j.jsb.2019.04.011.
  21. Yonekura K,  Ishikawa T, and Maki-Yonekura S. 2019. “A New Cryo-EM System for Electron 3D Crystallography by EEFD.” Journal of Structural Biology 206(2). doi: 10.1016/j.jsb.2019.03.009.
  22. Hamaguchi T, , Kawakami M, Furukawa H, and Miyata M. 2019. “Identification of Novel Protein Domain for Sialyloligosaccharide Binding Essential to Mycoplasma mobile Gliding.” FEMS Microbiology Letters 366(3). doi: 10.1093/femsle/fnz016.